PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g11610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 358aa    MW: 39670.7 Da    PI: 8.4169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g11610.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-13184231355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR+++ ++f  L  l+P +     kK +Ka++Le A++Y+k+Lq
  Vradi07g11610.1 184 QDHVIAERKRREKLSQRFIALSALVPGL-----KKTDKATVLEDAIKYVKQLQ 231
                      6799************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.955181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-11184231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-16185241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16185241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-13186235No hitNo description
SMARTSM003531.4E-14187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTQISSTVYL PEFGMEDPTL FHQYPMDSFP FQLDDFDFES FSASPKGSSS HKRLSSESTQ  60
NSSLTQSPET SVAPPRPTKQ PKTTMSTWSA YATDMIAPKA ASSSSSKIIS FDKSSASSVS  120
SQQLYKLDAA KLLKKPKIET GYGENLDFSA VASQTFYDNN SFLDYDKHEK KAAATMARNP  180
TQAQDHVIAE RKRREKLSQR FIALSALVPG LKKTDKATVL EDAIKYVKQL QERVKILEEQ  240
TVDKTVESAI FVKRSVVFSG DDSTYSGENT DQSVPEIEAR ISGKEVLVRL HCDKHSGRTA  300
AILRELEKHN LTVQSSSFLP FGNNTLDITI VAKMGKDYCL TAKDLIRSLS QCLRQLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194ERKRRE
2190195RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505902.10.0PREDICTED: transcription factor bHLH18-like isoform X2
TrEMBLA0A0S3R5E30.0A0A0S3R5E3_PHAAN; Uncharacterized protein
STRINGGLYMA05G23291.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-54bHLH family protein